Exome capture sequencing of colon tumor/normal pairs

27/05/2015
144 samples
DAC: EGAC00001000055
Technology: Illumina HiSeq 2000

Access Policy1 Study Files

Metadata

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GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT

GENENTECH DATA ACCESS COMMITTEEDATA ACCESS AGREEMENT WITH COMMERCIAL ORGANIZATIONThis Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User and User Organization (as defined below) governs the terms on which access will be granted to the genotype data obtained from Genentech.In signing this Agreement, User and User Organization agree to be bound by the terms and conditions of access set out in this Agreement.For the sake of clarity, the terms of access set out in this Agreement apply both to the User and the User Organization (as defined below). User Organization and User are referred to within the Agreement as “You” and “Your” shall be construed accordingly.Definitions: gRED means Genentech Research and Early Development.Data means all and any human genetic data obtained from Genentech and generated by gRED. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto.User means a researcher whose User Organization has previously completed this Data Access Agreement and has received acknowledgement of its acceptance.Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.User Organization means the commercial organization at which the User is employed or affiliated.Genentech Data Access Committee means members of the gRED organization that is responsible for making the data access decisions for the genotype data generated by gRED.Terms and Conditions: In signing this Agreement:1.You agree to use the Data only for the advancement of medical research.2.You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.3.You agree not to attempt to link the Data provided under this Agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees.4.You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or program management. Should You wish to share the Data with a collaborator outside the same Organization, the third party must make a separate application for access to the Data.5.You agree to use the Data for the approved purpose and project described in your application; use of the Data for a new purpose or project will require a new application and approval.6.You shall be free to publish the results of the research using the Data for the approved purpose. You agree to acknowledge in any such publication that the research makes use of Data generated by Genentech/gRED.7.You accept that Genentech:a.bears no legal responsibility for the accuracy or comprehensiveness of the Data; and b.accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason.8.You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted.9.You recognize that nothing in this Agreement shall operate to transfer to the User Organization any intellectual property rights relating to the Data. The User Organization has the right to develop intellectual property based on the comparisons with their own data. Any invention or discovery made by User and/or User Organization arising out of the use of the Data (each a “Data Invention”) shall be promptly disclosed to Genentech in writing. User Organization hereby grants to Genentech a royalty-free, fully-paid, non-exclusive license (i) to make, use and import such Data Invention for internal research purposes; and (ii) to make, use, offer to sell, sell and import such Data Invention to the extent necessary to commercialize Genentech product(s), which license shall be sublicensable to Genentech’s affiliates and development and commercialization collaborators on such product(s). 10.You agree that you will submit a report to the Genentech Data Access Committee, if requested, on completion of the agreed purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Organization.11.(a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws.(b) The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 12.This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 13 below.13.You accept that this Agreement will terminate immediately upon any breach of this Agreement by You and You will be required to destroy any Data held. Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination: Sections 1 – 10, 11(a), and 13. For and on behalf of User/Applicant:___________________________Signature of User/Applicant___________________________Print Name of User/Applicant___________________________Title___________________________DateFor and on behalf of User Organization:___________________________Signature of Organizational or Administrative Authority___________________________Print Name___________________________Title___________________________Name of User Organization___________________________DateFor Genentech, Inc.:___________________________Signature___________________________Print Name___________________________Title___________________________Date

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
	Genentech Colon Cancer Screen	Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00000116604	fastq.gz	6.2 GB
EGAF00000116605	fastq.gz	6.2 GB
EGAF00000116606	fastq.gz	6.7 GB
EGAF00000116607	fastq.gz	6.6 GB
EGAF00000116608	fastq.gz	6.9 GB
EGAF00000116609	fastq.gz	6.9 GB
EGAF00000116610	fastq.gz	6.2 GB
EGAF00000116611	fastq.gz	6.0 GB
EGAF00000116612	fastq.gz	6.1 GB
EGAF00000116613	fastq.gz	6.1 GB
EGAF00000116614	fastq.gz	6.8 GB
EGAF00000116615	fastq.gz	6.7 GB
EGAF00000116616	fastq.gz	5.6 GB
EGAF00000116617	fastq.gz	5.5 GB
EGAF00000116618	fastq.gz	8.3 GB
EGAF00000116619	fastq.gz	8.4 GB
EGAF00000116620	fastq.gz	10.2 GB
EGAF00000116621	fastq.gz	10.4 GB
EGAF00000116622	fastq.gz	5.7 GB
EGAF00000116623	fastq.gz	5.6 GB
EGAF00000116624	fastq.gz	6.1 GB
EGAF00000116625	fastq.gz	6.2 GB
EGAF00000116626	fastq.gz	6.2 GB
EGAF00000116627	fastq.gz	6.2 GB
EGAF00000116628	fastq.gz	8.8 GB
EGAF00000116629	fastq.gz	8.9 GB
EGAF00000116630	fastq.gz	6.0 GB
EGAF00000116631	fastq.gz	5.9 GB
EGAF00000116632	fastq.gz	7.6 GB
EGAF00000116633	fastq.gz	7.6 GB
EGAF00000116634	fastq.gz	8.9 GB
EGAF00000116635	fastq.gz	9.0 GB
EGAF00000116636	fastq.gz	6.8 GB
EGAF00000116637	fastq.gz	6.8 GB
EGAF00000116638	fastq.gz	7.3 GB
EGAF00000116639	fastq.gz	7.4 GB
EGAF00000116640	fastq.gz	5.6 GB
EGAF00000116641	fastq.gz	5.7 GB
EGAF00000116642	fastq.gz	5.3 GB
EGAF00000116643	fastq.gz	5.3 GB
EGAF00000116644	fastq.gz	7.4 GB
EGAF00000116645	fastq.gz	7.3 GB
EGAF00000116646	fastq.gz	9.0 GB
EGAF00000116647	fastq.gz	9.1 GB
EGAF00000116648	fastq.gz	6.6 GB
EGAF00000116649	fastq.gz	6.6 GB
EGAF00000116650	fastq.gz	6.9 GB
EGAF00000116651	fastq.gz	6.9 GB
EGAF00000116652	fastq.gz	9.0 GB
EGAF00000116653	fastq.gz	9.3 GB
EGAF00000116654	fastq.gz	6.1 GB
EGAF00000116655	fastq.gz	6.1 GB
EGAF00000116656	fastq.gz	4.8 GB
EGAF00000116657	fastq.gz	4.9 GB
EGAF00000116658	fastq.gz	7.0 GB
EGAF00000116659	fastq.gz	7.0 GB
EGAF00000116660	fastq.gz	6.2 GB
EGAF00000116661	fastq.gz	6.3 GB
EGAF00000116662	fastq.gz	7.3 GB
EGAF00000116663	fastq.gz	7.4 GB
EGAF00000116664	fastq.gz	5.8 GB
EGAF00000116665	fastq.gz	5.9 GB
EGAF00000116666	fastq.gz	9.1 GB
EGAF00000116667	fastq.gz	9.3 GB
EGAF00000116668	fastq.gz	5.9 GB
EGAF00000116669	fastq.gz	6.0 GB
EGAF00000116670	fastq.gz	6.9 GB
EGAF00000116671	fastq.gz	7.0 GB
EGAF00000116672	fastq.gz	9.6 GB
EGAF00000116673	fastq.gz	9.8 GB
EGAF00000116674	fastq.gz	8.9 GB
EGAF00000116675	fastq.gz	9.0 GB
EGAF00000116676	fastq.gz	19.4 GB
EGAF00000116677	fastq.gz	19.7 GB
EGAF00000116678	fastq.gz	5.1 GB
EGAF00000116679	fastq.gz	5.1 GB
EGAF00000116680	fastq.gz	5.9 GB
EGAF00000116681	fastq.gz	5.8 GB
EGAF00000116682	fastq.gz	5.5 GB
EGAF00000116683	fastq.gz	5.6 GB
EGAF00000116684	fastq.gz	6.4 GB
EGAF00000116685	fastq.gz	6.3 GB
EGAF00000116686	fastq.gz	6.1 GB
EGAF00000116687	fastq.gz	6.2 GB
EGAF00000116688	fastq.gz	8.5 GB
EGAF00000116689	fastq.gz	8.6 GB
EGAF00000116690	fastq.gz	8.0 GB
EGAF00000116691	fastq.gz	8.1 GB
EGAF00000116692	fastq.gz	5.5 GB
EGAF00000116693	fastq.gz	5.5 GB
EGAF00000116694	fastq.gz	7.7 GB
EGAF00000116695	fastq.gz	7.9 GB
EGAF00000116696	fastq.gz	8.0 GB
EGAF00000116697	fastq.gz	8.2 GB
EGAF00000116698	fastq.gz	5.6 GB
EGAF00000116699	fastq.gz	5.6 GB
EGAF00000116700	fastq.gz	6.8 GB
EGAF00000116701	fastq.gz	6.9 GB
EGAF00000116702	fastq.gz	7.3 GB
EGAF00000116703	fastq.gz	7.2 GB
EGAF00000116704	fastq.gz	6.4 GB
EGAF00000116705	fastq.gz	6.5 GB
EGAF00000116706	fastq.gz	6.3 GB
EGAF00000116707	fastq.gz	6.4 GB
EGAF00000116708	fastq.gz	5.5 GB
EGAF00000116709	fastq.gz	5.5 GB
EGAF00000116710	fastq.gz	6.1 GB
EGAF00000116711	fastq.gz	6.1 GB
EGAF00000116712	fastq.gz	6.3 GB
EGAF00000116713	fastq.gz	6.4 GB
EGAF00000116714	fastq.gz	5.6 GB
EGAF00000116715	fastq.gz	5.6 GB
EGAF00000116716	fastq.gz	4.9 GB
EGAF00000116717	fastq.gz	4.8 GB
EGAF00000116718	fastq.gz	6.5 GB
EGAF00000116719	fastq.gz	6.6 GB
EGAF00000116720	fastq.gz	5.7 GB
EGAF00000116721	fastq.gz	5.7 GB
EGAF00000116722	fastq.gz	7.6 GB
EGAF00000116723	fastq.gz	7.8 GB
EGAF00000116724	fastq.gz	7.0 GB
EGAF00000116725	fastq.gz	7.0 GB
EGAF00000116726	fastq.gz	5.0 GB
EGAF00000116727	fastq.gz	5.0 GB
EGAF00000116728	fastq.gz	8.3 GB
EGAF00000116729	fastq.gz	8.3 GB
EGAF00000116730	fastq.gz	7.2 GB
EGAF00000116731	fastq.gz	7.3 GB
EGAF00000116732	fastq.gz	6.5 GB
EGAF00000116733	fastq.gz	6.5 GB
EGAF00000116734	fastq.gz	5.3 GB
EGAF00000116735	fastq.gz	5.3 GB
EGAF00000116736	fastq.gz	8.1 GB
EGAF00000116737	fastq.gz	8.2 GB
EGAF00000116738	fastq.gz	6.8 GB
EGAF00000116739	fastq.gz	6.9 GB
EGAF00000116740	fastq.gz	6.0 GB
EGAF00000116741	fastq.gz	6.0 GB
EGAF00000116742	fastq.gz	6.0 GB
EGAF00000116743	fastq.gz	5.9 GB
EGAF00000116744	fastq.gz	5.4 GB
EGAF00000116745	fastq.gz	5.2 GB
EGAF00000116746	fastq.gz	4.4 GB
EGAF00000116747	fastq.gz	4.4 GB
EGAF00000116748	fastq.gz	15.6 GB
EGAF00000116749	fastq.gz	15.7 GB
EGAF00000116750	fastq.gz	4.6 GB
EGAF00000116751	fastq.gz	4.6 GB
EGAF00000116752	fastq.gz	5.7 GB
EGAF00000116753	fastq.gz	5.7 GB
EGAF00000116754	fastq.gz	6.8 GB
EGAF00000116755	fastq.gz	6.9 GB
EGAF00000116756	fastq.gz	6.8 GB
EGAF00000116757	fastq.gz	6.9 GB
EGAF00000116758	fastq.gz	5.9 GB
EGAF00000116759	fastq.gz	5.4 GB
EGAF00000116760	fastq.gz	14.0 GB
EGAF00000116761	fastq.gz	14.2 GB
EGAF00000116762	fastq.gz	6.3 GB
EGAF00000116763	fastq.gz	6.4 GB
EGAF00000116764	fastq.gz	5.5 GB
EGAF00000116765	fastq.gz	5.5 GB
EGAF00000116766	fastq.gz	6.5 GB
EGAF00000116767	fastq.gz	6.3 GB
EGAF00000116768	fastq.gz	6.3 GB
EGAF00000116769	fastq.gz	6.3 GB
EGAF00000116770	fastq.gz	6.8 GB
EGAF00000116771	fastq.gz	6.9 GB
EGAF00000116772	fastq.gz	6.5 GB
EGAF00000116773	fastq.gz	6.5 GB
EGAF00000116774	fastq.gz	4.9 GB
EGAF00000116775	fastq.gz	4.9 GB
EGAF00000116776	fastq.gz	5.7 GB
EGAF00000116777	fastq.gz	5.6 GB
EGAF00000116778	fastq.gz	5.3 GB
EGAF00000116779	fastq.gz	5.3 GB
EGAF00000116780	fastq.gz	5.9 GB
EGAF00000116781	fastq.gz	5.9 GB
EGAF00000116782	fastq.gz	5.9 GB
EGAF00000116783	fastq.gz	6.0 GB
EGAF00000116784	fastq.gz	6.0 GB
EGAF00000116785	fastq.gz	6.0 GB
EGAF00000116786	fastq.gz	5.8 GB
EGAF00000116787	fastq.gz	5.8 GB
EGAF00000116788	fastq.gz	7.5 GB
EGAF00000116789	fastq.gz	7.6 GB
EGAF00000116790	fastq.gz	5.3 GB
EGAF00000116791	fastq.gz	5.1 GB
EGAF00000116792	fastq.gz	4.9 GB
EGAF00000116793	fastq.gz	4.9 GB
EGAF00000116794	fastq.gz	5.0 GB
EGAF00000116795	fastq.gz	5.0 GB
EGAF00000116796	fastq.gz	5.6 GB
EGAF00000116797	fastq.gz	5.7 GB
EGAF00000116798	fastq.gz	5.8 GB
EGAF00000116799	fastq.gz	5.9 GB
EGAF00000116800	fastq.gz	9.1 GB
EGAF00000116801	fastq.gz	9.1 GB
EGAF00000116802	fastq.gz	5.0 GB
EGAF00000116803	fastq.gz	4.9 GB
EGAF00000116804	fastq.gz	5.2 GB
EGAF00000116805	fastq.gz	5.2 GB
EGAF00000116806	fastq.gz	5.5 GB
EGAF00000116807	fastq.gz	5.5 GB
EGAF00000116808	fastq.gz	5.2 GB
EGAF00000116809	fastq.gz	5.1 GB
EGAF00000116810	fastq.gz	5.5 GB
EGAF00000116811	fastq.gz	5.5 GB
EGAF00000116812	fastq.gz	10.1 GB
EGAF00000116813	fastq.gz	9.8 GB
EGAF00000116814	fastq.gz	4.9 GB
EGAF00000116815	fastq.gz	4.9 GB
EGAF00000116816	fastq.gz	6.6 GB
EGAF00000116817	fastq.gz	6.7 GB
EGAF00000116818	fastq.gz	6.4 GB
EGAF00000116819	fastq.gz	6.5 GB
EGAF00000116820	fastq.gz	5.3 GB
EGAF00000116821	fastq.gz	5.3 GB
EGAF00000116822	fastq.gz	5.2 GB
EGAF00000116823	fastq.gz	5.2 GB
EGAF00000116824	fastq.gz	5.0 GB
EGAF00000116825	fastq.gz	5.0 GB
EGAF00000116826	fastq.gz	6.2 GB
EGAF00000116827	fastq.gz	6.3 GB
EGAF00000116828	fastq.gz	6.7 GB
EGAF00000116829	fastq.gz	6.7 GB
EGAF00000116830	fastq.gz	6.5 GB
EGAF00000116831	fastq.gz	6.5 GB
EGAF00000116832	fastq.gz	7.1 GB
EGAF00000116833	fastq.gz	7.1 GB
EGAF00000116834	fastq.gz	6.4 GB
EGAF00000116835	fastq.gz	6.4 GB
EGAF00000116836	fastq.gz	5.2 GB
EGAF00000116837	fastq.gz	5.1 GB
EGAF00000116838	fastq.gz	5.1 GB
EGAF00000116839	fastq.gz	5.1 GB
EGAF00000116840	fastq.gz	6.8 GB
EGAF00000116841	fastq.gz	6.9 GB
EGAF00000116842	fastq.gz	4.9 GB
EGAF00000116843	fastq.gz	4.9 GB
EGAF00000116844	fastq.gz	6.2 GB
EGAF00000116845	fastq.gz	6.2 GB
EGAF00000116846	fastq.gz	7.0 GB
EGAF00000116847	fastq.gz	7.1 GB
EGAF00000116848	fastq.gz	7.2 GB
EGAF00000116849	fastq.gz	7.3 GB
EGAF00000116850	fastq.gz	5.7 GB
EGAF00000116851	fastq.gz	5.7 GB
EGAF00000116852	fastq.gz	5.5 GB
EGAF00000116853	fastq.gz	5.3 GB
EGAF00000116854	fastq.gz	6.3 GB
EGAF00000116855	fastq.gz	6.4 GB
EGAF00000116856	fastq.gz	5.5 GB
EGAF00000116857	fastq.gz	5.6 GB
EGAF00000116858	fastq.gz	20.7 GB
EGAF00000116859	fastq.gz	21.2 GB
EGAF00000116860	fastq.gz	6.0 GB
EGAF00000116861	fastq.gz	6.1 GB
EGAF00000116862	fastq.gz	5.2 GB
EGAF00000116863	fastq.gz	5.2 GB
EGAF00000116864	fastq.gz	5.7 GB
EGAF00000116865	fastq.gz	5.8 GB
EGAF00000116866	fastq.gz	6.3 GB
EGAF00000116867	fastq.gz	6.3 GB
EGAF00000116868	fastq.gz	7.9 GB
EGAF00000116869	fastq.gz	8.0 GB
EGAF00000116870	fastq.gz	5.5 GB
EGAF00000116871	fastq.gz	5.5 GB
EGAF00000116872	fastq.gz	5.1 GB
EGAF00000116873	fastq.gz	5.1 GB
EGAF00000116874	fastq.gz	6.2 GB
EGAF00000116875	fastq.gz	6.1 GB
EGAF00000116876	fastq.gz	5.2 GB
EGAF00000116877	fastq.gz	5.2 GB
EGAF00000116878	fastq.gz	5.8 GB
EGAF00000116879	fastq.gz	5.8 GB
EGAF00000116880	fastq.gz	7.2 GB
EGAF00000116881	fastq.gz	7.3 GB
EGAF00000116882	fastq.gz	5.9 GB
EGAF00000116883	fastq.gz	6.0 GB
EGAF00000116884	fastq.gz	6.4 GB
EGAF00000116885	fastq.gz	6.4 GB
EGAF00000116886	fastq.gz	4.7 GB
EGAF00000116887	fastq.gz	4.7 GB
EGAF00000116888	fastq.gz	6.0 GB
EGAF00000116889	fastq.gz	6.0 GB
EGAF00000116890	fastq.gz	8.8 GB
EGAF00000116891	fastq.gz	8.8 GB
288 Files (1.9 TB)