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DACs
EGAC00001000435
Genentech Meso DAC
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This DAC controls 6 datasets
Dataset ID
Description
Technology
Samples
EGAD00001001913
Exome sequencing data for Mesothelioma
Illumina HiSeq 2500
198
EGAD00001001914
RNA-seq data for mesothelioma cell lines after spliceostatin (SSA) or control (DMSO) treatment.
Illumina HiSeq 2000
12
EGAD00001001915
RNA-Seq data for Mesothelioma.
Illumina HiSeq 2000
211
EGAD00001001916
Targeted sequencing using SPET for Mesothelioma.
Illumina HiSeq 2000
207
EGAD00001001917
PacBio data for mesothelioma cell line NCI-H2595.
PacBio RS II
1
EGAD00001003919
We performed whole genome, whole or targeted exome sequencing for 289 individuals from India. This included 152 clinically diagnosed MODY and 137 control samples. Whole genome libraries were constructed using TruSeqNano DNA Library Preparation Kit (Illumina, CA) and sequenced on Illumina HiSeq2500 (Illumina, CA). The whole exome analysis was performed using Agilent SureSelect (Santa Clara, CA) Human All Exome kit v5 (50 Mb). Exome capture libraries were sequenced on HiSeq 2500 (Illumina, CA). Targeted exome sequencing was performed using custom probes corresponding to 1965 genes implicated in pancreatic cell biology and/or diabetes.
Illumina HiSeq 2500
289