McGill ECDAC

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This DAC controls 32 datasets

Dataset ID	Description	Technology	Samples
EGAD00001001276	McGill EMC Release 4 for cell type "induced pluripotent stem cell"	unspecified	8
EGAD00001001277	McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"	unspecified	1
EGAD00001001278	McGill EMC Release 4 in tissue "venous blood" for cell type "B cell"	unspecified	41
EGAD00001001279	McGill EMC Release 4 in tissue "venous blood" for cell type "CD4-positive helper T cell"	unspecified	55
EGAD00001001280	McGill EMC Release 4 in tissue "venous blood" for cell type "CD4-positive, alpha-beta T cell"	unspecified	40
EGAD00001001281	McGill EMC Release 4 in tissue "venous blood" for cell type "eosinophil"	unspecified	3
EGAD00001001282	McGill EMC Release 4 in tissue "venous blood" for cell type "Monocyte"	unspecified	82
EGAD00001001283	McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"	unspecified	20
EGAD00001001284	McGill EMC Release 4 in tissue "Brodmann (1909) area 11"	unspecified	1
EGAD00001001285	McGill EMC Release 4 in tissue "Brodmann (1909) area 44"	unspecified	1
EGAD00001001286	McGill EMC Release 4 in tissue "Brodmann (1909) area 8;Brodmann (1909) area 9"	unspecified	1
EGAD00001001287	McGill EMC Release 4 in tissue "kidney"	unspecified	2
EGAD00001001288	McGill EMC Release 4 in tissue "skeletal muscle tissue"	unspecified	29
EGAD00001001289	McGill EMC Release 4 for assay "Bisulfite-seq": Methylation profiling by high-throughput sequencing	unspecified	44
EGAD00001001290	McGill EMC Release 4 for assay "RNA-seq": Transcriptome profiling by high-throughput sequencing	unspecified	261
EGAD00001001291	McGill EMC Release 4 for assay "mRNA-seq": Transcriptome profiling by high-throughput sequencing	unspecified	40
EGAD00001001292	McGill EMC Release 4 for assay "smRNA-seq": Transcriptome profiling by high-throughput sequencing	unspecified	6
EGAD00001001293	McGill EMC Release 4 for assay "ChIP-Seq Input"	unspecified	52
EGAD00001001294	McGill EMC Release 4 for assay "H3K27me3"	unspecified	32
EGAD00001001295	McGill EMC Release 4 for assay "H3K36me3"	unspecified	37
EGAD00001001296	McGill EMC Release 4 for assay "H3K4me1"	unspecified	41
EGAD00001001297	McGill EMC Release 4 for assay "H3K4me3"	unspecified	42
EGAD00001001298	McGill EMC Release 4 for assay "H3K27ac"	unspecified	36
EGAD00001001299	McGill EMC Release 4 for assay "H3K9me3"	unspecified	29
EGAD00001001300	McGill EMC Release 4 for assay "ATAC-seq": Sequencing of transposase-accessible chromatin as described by Buenrostro et al. (Nature Methods 10, 1213?1218 (2013) doi:10.1038/nmeth.2688)	unspecified	1
EGAD00001002705	McGill EMC Release 6 data	unspecified	59
EGAD00001003142	RNA sequencing of 31 patient-derived fibroblast cell lines from patients with inborn errors of cobalamin (vitamin B12) metabolism, and 7 control samples. The RNA seq library was prepared using the TruSeq Stranded Total RNA Sample Preparation Kit (Illumina RS-122–2301) including Ribo-Zero Gold depletion to remove ribosomal RNA. Sequencing was done via llumina Hi-Seq2000 sequencer, using 100bp paired end reads.	Illumina HiSeq 1500 Illumina HiSeq 2000	38
EGAD00001007678	Complete reference epigenome (as defined by IHEC) of a SaOS-2 cell line with osteosarcoma.	unspecified	1
EGAD00001007679	Complete reference epigenome (as defined by IHEC) of a lung epithelial cell line with non-small Cell Lung Adenocarcinoma	unspecified	4
EGAD00001007680	Complete reference epigenome (as defined by IHEC) of normal hTERT RPE1 cell line as well as hTERT RPE1 cell lines engineered to express EPC1-PHF1 and JAZF1-SUZ12 fusion proteins, found in Endometrial Stromal Sarcoma.	unspecified	3
EGAD00001008359	WGS and WGBS data from monocyte-derived macrophages that were infected with Influenza A virus strain PR8WT, or a matching non-infected control.	HiSeq X Ten	70
EGAD00001008422	RNA-seq, ATAC-seq and ChIPmentation data from monocyte-derived macrophages that were infected with Influenza A virus strain PR8WT, or a matching non-infected control.	Illumina NovaSeq 6000	8